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Deidentifying Clinical Text

Deidentifying Clinical Text is an agent skill (a SKILL.md file) from maziyarpanahi/openmed. Remove, mask, or replace PHI/PII in clinical free text on-device with OpenMed's deidentify(). It works with Claude Code, Codex and OpenCode and has 5,453 GitHub stars across a repository of 4 listed skills.

github.com/maziyarpanahi/openmed/skills/deidentifying-clinical-text (opens in a new tab)

View on GitHub (opens in a new tab)

Add this skill

Claude

This repository is a Claude Code plugin marketplace. In Claude Code:

/plugin marketplace add maziyarpanahi/openmed
/plugin install openmed-skills@openmed-skills

In the Claude apps, zip the deidentifying-clinical-text folder and upload it under Customize > Skills > + > Upload a skill (code execution must be on).

ChatGPT / Codex

Codex reads skills from .agents/skills/ in a repo or ~/.agents/skills/ for every project:

git clone --depth 1 https://github.com/maziyarpanahi/openmed.git
cp -r openmed/skills/deidentifying-clinical-text .agents/skills/deidentifying-clinical-text   # repo; ~/.agents/skills for all projects

Standalone skills also load in the ChatGPT desktop app.

Cursor

Cursor loads skills from .cursor/skills/ (or ~/.cursor/skills/) and also reads .claude/skills/:

git clone --depth 1 https://github.com/maziyarpanahi/openmed.git
cp -r openmed/skills/deidentifying-clinical-text .cursor/skills/deidentifying-clinical-text   # project; ~/.cursor/skills for all projects

Source (checked Oct 7, 2026): code.claude.com/docs/en/skills (opens in a new tab), code.claude.com/docs/en/plugin-marketplaces (opens in a new tab), support.claude.com/en/articles/12512180-using-skills-in-claude (opens in a new tab), learn.chatgpt.com/docs/build-skills (opens in a new tab), cursor.com/docs/context/skills (opens in a new tab)

What this skill does

Remove, mask, or replace PHI/PII in clinical free text on-device with OpenMed's deidentify(). Use when the user needs to de-identify medical notes, strip patient identifiers, redact PHI before sharing or analysis, anonymize discharge summaries, or pick a de-id method (mask vs remove vs replace vs hash vs shiftdates). Covers confidencethreshold for safety, consistent+seed for stable surrogates, keepmapping for reversible de-id, policy= profiles, and the DeidentificationResult fields.

When it triggers

  • Use when the user needs to de-identify medical notes, strip patient identifiers, redact PHI before sharing or analysis, anonymize discharge summaries, or pick a de-id method (mask vs remove vs replace vs hash vs shiftdates).

More skills in maziyarpanahi/openmed

4 skills are listed from this repository.

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FAQ

Deidentifying Clinical Text FAQ

Still curious? Email info@appsgit.com.

What is the Deidentifying Clinical Text skill?

Deidentifying Clinical Text is an agent skill (a SKILL.md file) from maziyarpanahi/openmed. Remove, mask, or replace PHI/PII in clinical free text on-device with OpenMed's deidentify(). It works with Claude Code, Codex and OpenCode and has 5,453 GitHub stars across a repository of 4 listed skills. Its SKILL.md lives at github.com/maziyarpanahi/openmed/skills/deidentifying-clinical-text.

How do I install the Deidentifying Clinical Text skill?

In Claude Code, run /plugin marketplace add maziyarpanahi/openmed and then /plugin install openmed-skills@openmed-skills. For Codex or Cursor, copy the deidentifying-clinical-text folder into .agents/skills/ or .cursor/skills/.

Is the Deidentifying Clinical Text skill free?

Yes. The repository is open source under the Apache-2.0 license.

Is Deidentifying Clinical Text maintained?

The repository's most recent commit was on Oct 3, 2026. Its latest release is v2.5.0. appsgit only lists skills from repositories with a commit in the last six months.